Bioinformatics Software


Software Offered for Use at MRC

CLC Genomics Workbench

MRC has this software for use, loaded on a computer. You must make an appointment. Contact Jian Yan

CLC Genomics Workbench, for analyzing and visualizing next generation sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow.

Partek Genomics Suite

MRC has this software for use, loaded on a computer. You must make an appointment. Contact Jian Yan

PartekĀ® Genomics Suiteā„¢ is a comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noisy data. The software is unique in supporting all microarray and next generation sequencing technologies including gene expression and digital gene expression (DGE), exon/alternative splicing and RNA-Seq, copy number and association, ChIP-chip, ChIP-seq, and microRNA in a single software package allowing for analysis of multiple applications in one complete solution.


Software Licenses Available

DNAMAN

One license per Principal Investigator. Must fill out paperwork. Contact Bill Taylor

DNAMAN is a one-for-all software package for molecular biology applications. This package provides an integrated system with versatile functions for high efficiency sequence analysis. You no longer need one program for restriction analyses and others for multiple sequence alignment, designing PCR primers, protein sequence analysis or drawing plasmids ... DNAMAN carries out all these tasks for you.

GeneIndexer

One license per Principal Investigator. Contact Terry Mark Major

GeneIndexer, a cutting edge semantic engine, was designed to efficiently reveal known and unknown genetic relationships using all relevant genomic literature.


Recommended Freeware for Academics

Microarray Data

Cytoscape (Pathway Analysis)
GenMAPP (Pathway Analysis)
KEGG (Pathway Analysis)
Pathvisio (Pathway Analysis)
WikiPathways (Pathway Analysis)
DAVID (Functional Annotation Tools)
Cluster and Treeview (Clustering)
dChip (Analysis)
R Project (Statistical Analysis)
SAM (Significance Analysis)
PAM (Prediction Analysis)

DNA Sequencer Data

ABI Sequence Scanning Software
Chromas lite
Sequencher